Variant report

Variant	rs6456603
Chromosome Location	chr6:24295500-24295501
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1417412	1.00[EUR][1000 genomes]
rs6911203	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932795	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6941505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726620	1.00[EUR][1000 genomes]
rs73726626	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726627	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726630	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726631	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726635	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726636	1.00[EUR][1000 genomes]
rs73726641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726644	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726649	1.00[EUR][1000 genomes]
rs73726650	1.00[EUR][1000 genomes]
rs7771319	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7773060	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
2	chr6:24288600-24296200	Weak transcription	Fetal Kidney	kidney
3	chr6:24292200-24302000	Weak transcription	A549	lung
4	chr6:24294600-24297400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:24294800-24298000	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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