Variant report

Variant	rs73726630
Chromosome Location	chr6:24244040-24244041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1417412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6456603	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6911203	0.88[AFR][1000 genomes]
rs6932795	1.00[EUR][1000 genomes]
rs6941505	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726620	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726635	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726636	1.00[EUR][1000 genomes]
rs73726641	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726642	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726644	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73727534	1.00[AMR][1000 genomes]
rs7771319	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773060	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:24241600-24245000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:24242600-24245000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:24242600-24245600	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:24242800-24244600	Strong transcription	HepG2	liver
8	chr6:24242800-24245400	Enhancers	Pancreas	Pancrea
9	chr6:24243600-24245800	Enhancers	Colon Smooth Muscle	Colon
10	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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