Variant report

Variant	rs73726635
Chromosome Location	chr6:24251761-24251762
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1417412	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6456603	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911203	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932795	1.00[EUR][1000 genomes]
rs6941505	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726620	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726626	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726627	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726630	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726631	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726636	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726641	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726642	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726644	1.00[EUR][1000 genomes]
rs73726649	1.00[EUR][1000 genomes]
rs73726650	1.00[EUR][1000 genomes]
rs7771319	1.00[EUR][1000 genomes]
rs7773060	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
3	chr6:24249800-24252600	Strong transcription	HepG2	liver
4	chr6:24249800-24253000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:24249800-24253200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:24250000-24253200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:24250200-24253200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:24250400-24252600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:24250400-24253200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:24250400-24253800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:24250600-24251800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:24250800-24252200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:24251000-24252800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:24251200-24253000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:24251200-24253400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:24251400-24252400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:24251400-24252400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr6:24251600-24252000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:24251600-24252400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:24251600-24253000	Enhancers	HUES6 Cell Line	embryonic stem cell

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