Variant report

Variant	rs6456741
Chromosome Location	chr6:26617058-26617059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:26616837-26617150	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:26614361..26617141-chr6:26622311..26624459,2	K562	blood:
2	chr6:26615367..26617141-chr6:26622311..26624168,2	K562	blood:
3	chr6:26596096..26597839-chr6:26614965..26617988,3	K562	blood:
4	chr6:26611565..26613102-chr6:26615089..26617603,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271071	TF binding region
ENSG00000146109	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10456330	1.00[CEU][hapmap]
rs10456332	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10484440	0.91[CEU][hapmap]
rs12189841	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12195971	1.00[CEU][hapmap]
rs12199239	1.00[CEU][hapmap]
rs12201890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202419	1.00[CEU][hapmap]
rs12204145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205909	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207181	1.00[CEU][hapmap]
rs12207224	0.84[EUR][1000 genomes]
rs12208390	1.00[CEU][hapmap]
rs12209651	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211201	1.00[CEU][hapmap]
rs12212145	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213722	1.00[CEU][hapmap]
rs28611089	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3800304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3873182	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4437460	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4515370	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456742	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843802	0.84[EUR][1000 genomes]
rs72844476	0.82[EUR][1000 genomes]
rs72844495	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845509	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845515	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26616000-26617200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:26616800-26617200	Active TSS	Aorta	Aorta

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