Variant report

Variant	rs3800304
Chromosome Location	chr6:26598798-26598799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26155821..26161666-chr6:26595746..26599191,6	K562	blood:
2	chr6:26123945..26125914-chr6:26596676..26599538,2	MCF-7	breast:
3	chr6:26594524..26600977-chr6:27096034..27104390,19	K562	blood:
4	chr4:99944161..99945674-chr6:26596054..26598932,3	K562	blood:
5	chr6:26586123..26588537-chr6:26597287..26599098,2	K562	blood:
6	chr6:26597702..26602573-chr6:27112472..27116781,7	MCF-7	breast:
7	chr6:26593362..26600987-chr6:27097692..27106488,18	K562	blood:
8	chr6:26500256..26501997-chr6:26596237..26599100,2	K562	blood:
9	chr6:26595623..26599966-chr6:27100615..27102925,4	MCF-7	breast:
10	chr6:26598518..26601187-chr6:27104748..27107582,2	MCF-7	breast:
11	chr4:99942650..99945674-chr6:26595832..26598932,6	K562	blood:
12	chr6:26593150..26599498-chr6:27112360..27118946,12	K562	blood:
13	chr6:26535400..26541597-chr6:26593643..26598951,8	K562	blood:
14	chr6:26595477..26598975-chr6:26986599..26989051,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000180596	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000250496	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000124557	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000164024	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000238621	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10456330	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10456332	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10484440	0.91[CEU][hapmap]
rs12189841	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12195971	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12199239	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12200782	1.00[CEU][hapmap]
rs12201890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202419	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12204145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207181	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12207224	0.90[EUR][1000 genomes]
rs12208390	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12209651	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211201	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12212145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213722	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs28611089	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3873182	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs41267923	0.83[EUR][1000 genomes]
rs4437460	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4515370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456742	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843734	0.83[EUR][1000 genomes]
rs72843802	0.90[EUR][1000 genomes]
rs72844476	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72844495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773878	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26597200-26598800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
2	chr6:26597400-26598800	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr6:26598000-26598800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:26598000-26604800	Weak transcription	Aorta	Aorta
5	chr6:26598000-26606800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:26598200-26598800	Transcr. at gene 5' and 3'	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:26598200-26598800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:26598200-26598800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:26598200-26598800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:26598200-26598800	Genic enhancers	Placenta	Placenta
11	chr6:26598200-26598800	Genic enhancers	Lung	lung
12	chr6:26598200-26598800	Enhancers	Right Atrium	heart
13	chr6:26598200-26598800	Transcr. at gene 5' and 3'	Hela-S3	cervix
14	chr6:26598200-26599000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:26598200-26599000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:26598200-26599000	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
17	chr6:26598200-26599200	Genic enhancers	Primary B cells from peripheral blood	blood
18	chr6:26598200-26599200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:26598200-26599200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:26598200-26599200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:26598200-26599200	Genic enhancers	Thymus	Thymus
22	chr6:26598200-26599200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
23	chr6:26598200-26607800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:26598400-26598800	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:26598400-26598800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:26598400-26598800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:26598400-26598800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:26598400-26598800	Genic enhancers	Liver	Liver
29	chr6:26598400-26598800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:26598400-26598800	Genic enhancers	Esophagus	oesophagus
31	chr6:26598400-26598800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:26598400-26598800	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
33	chr6:26598400-26598800	Weak transcription	Fetal Kidney	kidney
34	chr6:26598400-26598800	Genic enhancers	Fetal Muscle Trunk	muscle
35	chr6:26598400-26598800	Genic enhancers	Left Ventricle	heart
36	chr6:26598400-26598800	Genic enhancers	Placenta Amnion	Placenta Amnion
37	chr6:26598400-26598800	Genic enhancers	Spleen	Spleen
38	chr6:26598400-26598800	Transcr. at gene 5' and 3'	HepG2	liver
39	chr6:26598400-26598800	Weak transcription	NHDF-Ad	bronchial
40	chr6:26598400-26598800	Weak transcription	Osteobl	bone
41	chr6:26598400-26599000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
42	chr6:26598400-26599000	Genic enhancers	Primary T cells fromperipheralblood	blood
43	chr6:26598400-26599000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr6:26598400-26599000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr6:26598400-26599000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:26598400-26599000	Genic enhancers	Gastric	stomach
47	chr6:26598400-26599000	Genic enhancers	Psoas Muscle	Psoas
48	chr6:26598400-26599200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:26598400-26599200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:26598400-26599200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--

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