Variant report

Variant rs12200782
Chromosome Location chr6:26403036-26403037
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:26394000-26412000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr6:26401400-26403200 Active TSS Brain Angular Gyrus brain
3 chr6:26401400-26403600 Active TSS Psoas Muscle Psoas
4 chr6:26401800-26403200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr6:26401800-26403200 Active TSS Brain Anterior Caudate brain
6 chr6:26401800-26403200 Active TSS Brain Inferior Temporal Lobe brain
7 chr6:26401800-26403200 Active TSS Brain Substantia Nigra brain
8 chr6:26401800-26403200 Active TSS Colon Smooth Muscle Colon
9 chr6:26401800-26403200 Active TSS Pancreatic Islets Pancreatic Islet
10 chr6:26401800-26403200 Active TSS HMEC breast
11 chr6:26401800-26403400 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
12 chr6:26401800-26403400 Active TSS Brain Germinal Matrix brain
13 chr6:26401800-26403600 Active TSS Brain Hippocampus Middle brain
14 chr6:26401800-26403600 Active TSS Stomach Smooth Muscle stomach
15 chr6:26401800-26404600 Active TSS Rectal Mucosa Donor 29 rectum
16 chr6:26401800-26404800 Weak transcription Spleen Spleen
17 chr6:26402000-26403200 Active TSS HUES64 Cell Line embryonic stem cell
18 chr6:26402000-26403200 Active TSS iPS-20b Cell Line embryonic stem cell
19 chr6:26402000-26403200 Active TSS Breast Myoepithelial Primary Cells Breast
20 chr6:26402000-26403200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
21 chr6:26402000-26403200 Active TSS Fetal Adrenal Gland Adrenal Gland
22 chr6:26402000-26403200 Active TSS Fetal Muscle Leg muscle
23 chr6:26402000-26403200 Active TSS Ovary ovary
24 chr6:26402000-26403200 Active TSS Right Atrium heart
25 chr6:26402000-26403200 Active TSS Skeletal Muscle Male skeletal muscle
26 chr6:26402000-26403200 Active TSS Skeletal Muscle Female skeletal muscle
27 chr6:26402000-26403400 Active TSS Primary T helper 17 cells PMA-I stimulated --
28 chr6:26402000-26403400 Active TSS Primary T regulatory cells fromperipheralblood blood
29 chr6:26402000-26403400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
30 chr6:26402000-26403400 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
31 chr6:26402000-26403400 Active TSS Thymus Thymus
32 chr6:26402000-26403600 Active TSS Colonic Mucosa Colon
33 chr6:26402000-26403600 Active TSS Fetal Brain Female brain
34 chr6:26402000-26403600 Active TSS Fetal Kidney kidney
35 chr6:26402000-26404000 Active TSS Primary T helper naive cells from peripheral blood blood
36 chr6:26402000-26404200 Active TSS GM12878-XiMat blood
37 chr6:26402200-26403200 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr6:26402200-26403200 Active TSS HUES48 Cell Line embryonic stem cell
39 chr6:26402200-26403200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
40 chr6:26402200-26403200 Active TSS Primary monocytes fromperipheralblood blood
41 chr6:26402200-26403200 Active TSS Primary B cells from peripheral blood blood
42 chr6:26402200-26403200 Active TSS Primary T helper memory cells from peripheral blood 1 blood
43 chr6:26402200-26403200 Active TSS Primary T helper cells PMA-I stimulated --
44 chr6:26402200-26403200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
45 chr6:26402200-26403200 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
46 chr6:26402200-26403200 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
47 chr6:26402200-26403200 Active TSS Placenta Placenta
48 chr6:26402200-26403200 Active TSS Fetal Thymus thymus
49 chr6:26402200-26403200 Active TSS HSMMtube muscle
50 chr6:26402200-26403200 Active TSS NH-A brain

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