Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:28803282..28808663-chr6:28829877..28836776,13	K562	blood:
2	chr6:27859769..27862740-chr6:28829876..28831991,2	K562	blood:
3	chr6:28828478..28839935-chr6:28855092..28866386,31	K562	blood:
4	chr6:28804491..28806748-chr6:28829481..28831000,2	MCF-7	breast:
5	chr6:28806762..28809202-chr6:28828058..28830893,2	MCF-7	breast:
6	chr6:28823126..28835109-chr6:28859268..28867076,23	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10428805	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756140	1.00[ASN][1000 genomes]
rs11758303	1.00[ASN][1000 genomes]
rs12110866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58377234	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59303422	1.00[ASN][1000 genomes]
rs6917227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924101	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925173	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931486	1.00[EUR][1000 genomes]
rs6934771	1.00[EUR][1000 genomes]
rs6939310	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407222	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408940	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738297	1.00[ASN][1000 genomes]
rs7775657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	esv3403240	chr6:28808022-28832799	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28825400-28830200	Weak transcription	K562	blood
2	chr6:28828400-28830800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:28829400-28830600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:28829600-28831000	Weak transcription	HMEC	breast
5	chr6:28829600-28831400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:28829800-28831200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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