Variant report

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28827198..28830005-chr6:28973058..28974944,2	K562	blood:
2	chr6:28826523..28828569-chr6:28843120..28844906,2	K562	blood:
3	chr6:28826340..28828760-chr6:28889167..28890717,2	K562	blood:
4	chr6:28825473..28828698-chr6:28972881..28975179,3	K562	blood:
5	chr6:28823126..28835109-chr6:28859268..28867076,23	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM27-3	chr6:28827402-28829792	ENSG00000225595
2	lnc-TRIM27-3	chr6:28827402-28829792	NONHSAT108488

No data

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10428805	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756140	1.00[ASN][1000 genomes]
rs11758303	1.00[ASN][1000 genomes]
rs12110866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58377234	1.00[EUR][1000 genomes]
rs59303422	1.00[ASN][1000 genomes]
rs6456858	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924101	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931486	1.00[EUR][1000 genomes]
rs6934771	1.00[EUR][1000 genomes]
rs6939310	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407222	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408940	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738297	1.00[ASN][1000 genomes]
rs7775657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	esv3403240	chr6:28808022-28832799	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28825400-28830200	Weak transcription	K562	blood

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