Variant report

Variant	rs6924101
Chromosome Location	chr6:28787766-28787767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10428805	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751023	0.86[AMR][1000 genomes]
rs11756140	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758303	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110866	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58377234	0.86[EUR][1000 genomes]
rs59303422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60252997	0.86[AMR][1000 genomes]
rs6456858	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917227	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925173	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931486	0.86[EUR][1000 genomes]
rs6934771	0.86[EUR][1000 genomes]
rs6939310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391168	0.86[AMR][1000 genomes]
rs73403150	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73403152	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73403171	0.87[EUR][1000 genomes]
rs73403176	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73407222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407231	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407237	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407240	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407247	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407261	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408940	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738297	1.00[ASN][1000 genomes]
rs7775657	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767253	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28786000-28792200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28786400-28791000	Weak transcription	A549	lung
3	chr6:28786400-28791200	Weak transcription	K562	blood

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