Variant report

Variant	rs73403152
Chromosome Location	chr6:28733298-28733299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28731767..28734753-chr6:28735144..28738101,4	K562	blood:
2	chr6:28720936..28723199-chr6:28731913..28733640,2	K562	blood:
3	chr6:28730853..28733313-chr6:28805557..28808412,3	K562	blood:
4	chr6:28731867..28735071-chr6:28750775..28753093,3	K562	blood:
5	chr6:28686780..28689583-chr6:28731850..28734136,2	K562	blood:
6	chr6:28731785..28733596-chr6:28736349..28738667,2	K562	blood:

Variant related genes	Relation type
ENSG00000235559	Chromatin interaction
ENSG00000225173	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11751023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754275	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754985	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11756140	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11758303	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs59303422	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs60252997	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6924101	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6937342	1.00[ASN][1000 genomes]
rs6939310	0.86[AMR][1000 genomes]
rs73391145	1.00[ASN][1000 genomes]
rs73391160	1.00[ASN][1000 genomes]
rs73391168	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403171	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73407222	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9393925	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28731400-28733800	Active TSS	A549	lung
2	chr6:28731600-28733400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:28731800-28733400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr6:28731800-28733400	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:28731800-28734400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:28732000-28734600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
7	chr6:28732600-28733400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:28732800-28733600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:28732800-28734200	Weak transcription	K562	blood
10	chr6:28732800-28734400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr6:28733000-28733400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:28733000-28733400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:28733000-28733400	Bivalent/Poised TSS	Placenta	Placenta
14	chr6:28733000-28733400	Bivalent Enhancer	HMEC	breast
15	chr6:28733000-28733600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr6:28733000-28733600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:28733000-28734000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:28733200-28733400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:28733200-28733400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
20	chr6:28733200-28733400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:28733200-28733400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:28733200-28733400	Bivalent/Poised TSS	NHEK	skin
23	chr6:28733200-28733600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:28733200-28733600	Bivalent/Poised TSS	HSMM	muscle
25	chr6:28733200-28733800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
26	chr6:28733200-28733800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:28733200-28733800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast

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