Variant report

Variant	rs73391145
Chromosome Location	chr6:28680106-28680107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11751023	1.00[ASN][1000 genomes]
rs11754275	1.00[ASN][1000 genomes]
rs11754985	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937342	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391168	1.00[ASN][1000 genomes]
rs73403150	1.00[ASN][1000 genomes]
rs73403152	1.00[ASN][1000 genomes]
rs73403171	1.00[ASN][1000 genomes]
rs73403176	1.00[ASN][1000 genomes]
rs9393925	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv3449735	chr6:28679873-28681871	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28679400-28680200	Enhancers	K562	blood
2	chr6:28680000-28680400	Enhancers	A549	lung
3	chr6:28680000-28680600	Enhancers	HMEC	breast
4	chr6:28680000-28680600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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