Variant report

Variant	rs11754985
Chromosome Location	chr6:28711074-28711075
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
2	chr6:28187375..28189818-chr6:28709219..28712133,2	K562	blood:
3	chr6:28709118..28711959-chr6:28883965..28885709,2	K562	blood:
4	chr6:28710816..28712847-chr6:28804095..28806646,2	K562	blood:
5	chr6:28677024..28680294-chr6:28708371..28711108,3	K562	blood:
6	chr6:28706088..28707933-chr6:28709707..28711699,2	MCF-7	breast:
7	chr6:28708828..28711796-chr6:28725533..28729587,4	K562	blood:
8	chr6:28709763..28712235-chr6:28715610..28717205,2	K562	blood:
9	chr6:28709319..28711119-chr6:28746197..28748161,2	K562	blood:
10	chr6:28706840..28708346-chr6:28709488..28712383,2	MCF-7	breast:
11	chr6:28703036..28704771-chr6:28709650..28711944,2	MCF-7	breast:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11751023	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11754275	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60252997	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6937342	1.00[ASN][1000 genomes]
rs73391145	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391160	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391168	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403150	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403152	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403171	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403176	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9393925	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28710200-28711200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr6:28710200-28711400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:28710200-28711600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:28710200-28711800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:28710400-28711200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:28710400-28711400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:28710400-28711400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:28710400-28711400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:28710400-28711400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:28710400-28711400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:28710400-28711600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:28710400-28711600	Active TSS	A549	lung
13	chr6:28710400-28711800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:28710400-28712000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr6:28710400-28712200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:28710600-28711600	Active TSS	K562	blood
17	chr6:28710800-28711400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:28710800-28711400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:28711000-28711200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:28711000-28711200	Bivalent/Poised TSS	HUVEC	blood vessel
21	chr6:28711000-28711200	Bivalent/Poised TSS	Osteobl	bone
22	chr6:28711000-28711400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:28711000-28711400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:28711000-28711400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:28711000-28711400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:28711000-28711400	Flanking Bivalent TSS/Enh	HepG2	liver
27	chr6:28711000-28711400	Flanking Active TSS	HMEC	breast
28	chr6:28711000-28711400	Active TSS	HSMMtube	muscle
29	chr6:28711000-28711600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
30	chr6:28711000-28711600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:28711000-28711600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:28711000-28711600	Flanking Bivalent TSS/Enh	NHEK	skin

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