Variant report

Variant	rs6457989
Chromosome Location	chr6:11968064-11968065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10947670	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12196741	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2327462	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4714052	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4714067	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6921943	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs765392	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9349028	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9369003	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394416	0.82[AMR][1000 genomes]
rs9462314	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11961400-11972600	Weak transcription	Lung	lung
2	chr6:11964200-11969200	Weak transcription	Aorta	Aorta
3	chr6:11965800-11968600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:11966000-11968400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:11966000-11971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:11966000-11972400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:11966600-11968600	Weak transcription	Fetal Intestine Large	intestine
8	chr6:11967400-11968600	Enhancers	K562	blood
9	chr6:11967400-11969400	Enhancers	NHEK	skin
10	chr6:11968000-11969600	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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