Variant report

Variant	rs2327462
Chromosome Location	chr6:11936514-11936515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
2	chr6:11930123..11933207-chr6:11933304..11936591,6	K562	blood:
3	chr6:11936085..11938570-chr6:12004047..12005974,2	MCF-7	breast:
4	chr6:11935152..11937413-chr6:11941922..11944210,2	K562	blood:
5	chr6:11936452..11938325-chr6:12011530..12013078,2	K562	blood:
6	chr6:11935076..11937337-chr6:12009000..12010923,2	K562	blood:
7	chr6:11922420..11924748-chr6:11934170..11937049,2	K562	blood:
8	chr6:11934884..11941785-chr6:12006305..12013263,12	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10947670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1205844	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12196741	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs209783	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs209786	0.81[ASN][1000 genomes]
rs4714052	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4714067	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6457989	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6921943	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs765392	0.95[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs876828	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9349028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9369003	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380643	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394416	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9462314	0.81[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11933600-11938400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:11933800-11938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:11934200-11936800	ZNF genes & repeats	K562	blood
5	chr6:11936000-11938400	Weak transcription	Liver	Liver
6	chr6:11936400-11936600	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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