Variant report

Variant	rs209786
Chromosome Location	chr6:11939285-11939286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11937988..11940263-chr6:11954946..11957643,2	K562	blood:
2	chr6:11937603..11940541-chr6:11940588..11943697,3	K562	blood:
3	chr6:11938325..11940429-chr6:12012405..12015176,2	K562	blood:
4	chr6:11937603..11940636-chr6:11941347..11943697,3	K562	blood:
5	chr6:11913765..11915487-chr6:11938555..11940311,2	K562	blood:
6	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
7	chr6:11913987..11915505-chr6:11938167..11940311,2	K562	blood:
8	chr6:11938241..11940254-chr6:12007996..12010839,2	K562	blood:
9	chr6:11934884..11941785-chr6:12006305..12013263,12	K562	blood:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10947661	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1205845	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1205849	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1205850	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1210621	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs169714	0.80[AMR][1000 genomes]
rs209773	0.82[AMR][1000 genomes]
rs209774	0.80[AMR][1000 genomes]
rs209776	0.82[AMR][1000 genomes]
rs209782	0.80[AMR][1000 genomes]
rs209784	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2327462	0.81[ASN][1000 genomes]
rs23805	0.80[AMR][1000 genomes]
rs6457983	0.89[AMR][1000 genomes]
rs6905403	0.89[AMR][1000 genomes]
rs848901	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs864244	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9349028	0.82[ASN][1000 genomes]
rs9394412	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519516	chr6:11938672-11942371	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11937800-11940200	Weak transcription	Thymus	Thymus
2	chr6:11937800-11940600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:11938400-11939400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:11938600-11940200	Enhancers	GM12878-XiMat	blood
5	chr6:11938800-11939800	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:11939000-11939600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:11939000-11939600	Enhancers	Fetal Intestine Small	intestine
8	chr6:11939000-11939600	Enhancers	HUVEC	blood vessel
9	chr6:11939000-11939800	Enhancers	Fetal Intestine Large	intestine
10	chr6:11939000-11940000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:11939000-11940200	Weak transcription	Fetal Kidney	kidney
12	chr6:11939200-11940400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:11939200-11940600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:11939200-11940800	Enhancers	K562	blood
15	chr6:11939200-11942800	Weak transcription	Liver	Liver
16	chr6:11939200-11943400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:11939200-11943400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:11939200-11943600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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