Variant report

Variant	rs848901
Chromosome Location	chr6:11930186-11930187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11928332..11933261-chr6:12008543..12013027,5	K562	blood:
2	chr6:11930123..11933207-chr6:11933304..11936591,6	K562	blood:
3	chr6:11911731..11914610-chr6:11928299..11930986,2	K562	blood:
4	chr6:11929988..11932730-chr6:12024858..12026839,2	K562	blood:
5	chr6:11909743..11911670-chr6:11928243..11930233,2	K562	blood:
6	chr6:11929469..11931727-chr6:12007791..12010285,2	K562	blood:
7	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
8	chr6:11922871..11926216-chr6:11928261..11930855,3	K562	blood:
9	chr6:11921705..11923918-chr6:11929998..11931950,2	MCF-7	breast:
10	chr6:11928396..11930237-chr6:11946465..11949444,2	K562	blood:
11	chr6:11930110..11931880-chr6:12011189..12013378,2	K562	blood:
12	chr6:11920219..11922474-chr6:11929481..11931505,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10947661	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1205844	0.81[EUR][1000 genomes]
rs1205845	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1205849	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1205850	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1210621	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs169713	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs169714	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs209773	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs209774	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs209776	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs209780	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs209782	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs209784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209786	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs23805	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6457983	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6905403	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs85219	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs864244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380643	0.80[EUR][1000 genomes]
rs9394412	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11921800-11930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11926400-11932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:11928400-11932800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:11929400-11930600	Enhancers	NHEK	skin
6	chr6:11929600-11930200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:11929600-11930800	Enhancers	Fetal Lung	lung
8	chr6:11929800-11930600	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links