Variant report

Variant	rs209774
Chromosome Location	chr6:11915508-11915509
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11908909..11912016-chr6:11912838..11916318,3	K562	blood:
2	chr6:11911583..11913780-chr6:11914644..11916287,2	K562	blood:
3	chr6:11914819..11917032-chr6:11917286..11919137,2	K562	blood:
4	chr6:11914759..11918485-chr6:12007071..12010914,5	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10947661	0.94[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1205845	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1205849	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1205850	0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1210621	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs169713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169714	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs209773	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs209776	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs209777	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs209780	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209782	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs209784	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs209786	0.80[AMR][1000 genomes]
rs23805	0.85[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6457983	0.88[AMR][1000 genomes]
rs6905403	0.88[AMR][1000 genomes]
rs848901	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs85219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs864244	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs876828	0.84[EUR][1000 genomes]
rs9394412	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11910600-11918000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:11915400-11918000	Weak transcription	K562	blood

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