Variant report

Variant	rs169713
Chromosome Location	chr6:11920517-11920518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11917193..11921294-chr6:12011034..12015671,5	K562	blood:
2	chr6:11920219..11922474-chr6:11929481..11931505,4	K562	blood:
3	chr6:11918372..11921053-chr6:11921145..11922957,3	MCF-7	breast:
4	chr6:11919258..11923215-chr6:12007776..12010978,4	MCF-7	breast:
5	chr6:11917994..11921432-chr6:11923152..11925432,3	K562	blood:
6	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
7	chr6:11918788..11920525-chr6:12013699..12015737,2	K562	blood:
8	chr6:11919166..11921796-chr6:11941953..11944553,2	K562	blood:
9	chr6:11920056..11922933-chr6:11926115..11927726,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10947661	0.94[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1205845	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1205849	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205850	0.88[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[ASN][1000 genomes]
rs1205863	0.86[MEX][hapmap]
rs1205882	0.86[MEX][hapmap]
rs1205883	0.86[MEX][hapmap]
rs1205884	0.86[MEX][hapmap]
rs1205887	0.86[MEX][hapmap]
rs1210621	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs169714	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs209773	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209776	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209777	0.87[EUR][1000 genomes]
rs209780	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209782	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs209784	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs209814	0.86[MEX][hapmap]
rs23805	0.89[CEU][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6457983	0.83[AMR][1000 genomes]
rs6905403	0.83[AMR][1000 genomes]
rs848901	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs85219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs864244	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs864245	0.86[MEX][hapmap]
rs876828	0.83[EUR][1000 genomes]
rs9394412	0.94[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11917600-11921200	Weak transcription	Right Atrium	heart
2	chr6:11918000-11922200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:11918200-11920600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:11918200-11921000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:11918200-11921800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:11918200-11921800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:11918200-11922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:11918200-11922200	Enhancers	HSMMtube	muscle
9	chr6:11918400-11922400	Enhancers	NHEK	skin
10	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:11918600-11920600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:11918600-11921400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:11919000-11921200	Weak transcription	Small Intestine	intestine
14	chr6:11919000-11922200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:11919400-11920600	Weak transcription	Placenta	Placenta
16	chr6:11919400-11920600	Weak transcription	A549	lung
17	chr6:11919400-11920800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:11919400-11921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:11919400-11921200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:11919400-11921200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:11919400-11921200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:11919400-11921200	Weak transcription	Right Ventricle	heart
23	chr6:11919400-11922200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:11919400-11922200	Enhancers	Hela-S3	cervix
25	chr6:11919400-11922200	Enhancers	NHDF-Ad	bronchial
26	chr6:11919400-11922200	Enhancers	NHLF	lung
27	chr6:11919400-11924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:11919600-11920800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:11919600-11921000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:11919800-11920800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:11919800-11920800	Weak transcription	Fetal Intestine Large	intestine
34	chr6:11919800-11920800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:11919800-11920800	Weak transcription	HSMM	muscle
36	chr6:11919800-11920800	Weak transcription	NH-A	brain
37	chr6:11919800-11920800	Weak transcription	Osteobl	bone
38	chr6:11919800-11921000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:11919800-11921200	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:11919800-11921200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:11919800-11921200	Enhancers	K562	blood
42	chr6:11920200-11920600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:11920200-11920600	Enhancers	Stomach Smooth Muscle	stomach
44	chr6:11920200-11921000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr6:11920200-11921200	Weak transcription	Fetal Lung	lung
46	chr6:11920200-11921200	Weak transcription	Fetal Stomach	stomach
47	chr6:11920400-11921200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:11920400-11921600	Enhancers	Colon Smooth Muscle	Colon
49	chr6:11920400-11921800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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