Variant report

Variant	rs209780
Chromosome Location	chr6:11923194-11923195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11922189..11924916-chr6:12009286..12013032,3	K562	blood:
2	chr6:11922420..11924748-chr6:11934170..11937049,2	K562	blood:
3	chr6:11922871..11926216-chr6:11928261..11930855,3	K562	blood:
4	chr6:11921705..11923918-chr6:11929998..11931950,2	MCF-7	breast:
5	chr6:11917994..11921432-chr6:11923152..11925432,3	K562	blood:
6	chr6:11919258..11923215-chr6:12007776..12010978,4	MCF-7	breast:
7	chr6:11916020..11917550-chr6:11921352..11923792,2	K562	blood:
8	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
9	chr6:11916050..11918300-chr6:11921352..11923216,2	K562	blood:
10	chr6:11922704..11924727-chr6:12009251..12011603,2	K562	blood:
11	chr6:11922270..11924751-chr6:11942843..11945942,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10947661	0.84[CEU][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10947670	0.81[CHD][hapmap]
rs1205845	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1205850	0.84[GIH][hapmap];0.84[TSI][hapmap]
rs1205863	0.86[MEX][hapmap]
rs1205882	0.86[MEX][hapmap]
rs1205883	0.86[MEX][hapmap]
rs1205884	0.86[MEX][hapmap]
rs1205887	0.86[MEX][hapmap]
rs1210621	0.83[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs169713	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs169714	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209773	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209774	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209776	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209777	0.84[EUR][1000 genomes]
rs209782	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209783	0.81[ASN][1000 genomes]
rs209784	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209814	0.86[MEX][hapmap]
rs23805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457983	0.84[AMR][1000 genomes]
rs6905403	0.84[AMR][1000 genomes]
rs848901	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs85219	0.89[CEU][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs864244	0.84[CEU][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs864245	0.86[MEX][hapmap]
rs876828	0.81[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs9380643	0.89[CHD][hapmap]
rs9394412	0.84[CEU][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11919400-11924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:11921200-11923400	Enhancers	Fetal Lung	lung
6	chr6:11921600-11926000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:11921600-11926000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:11921600-11926200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:11921600-11926200	Weak transcription	Esophagus	oesophagus
10	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
11	chr6:11921800-11930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:11922200-11923200	Weak transcription	NHDF-Ad	bronchial
13	chr6:11922200-11923400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:11922200-11923600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:11922200-11924000	Enhancers	K562	blood

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