Variant report

Variant	rs209783
Chromosome Location	chr6:11926477-11926478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1205844	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1205845	0.83[EUR][1000 genomes]
rs1210621	0.81[EUR][1000 genomes]
rs209777	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs209780	0.81[ASN][1000 genomes]
rs209782	0.81[ASN][1000 genomes]
rs209784	0.84[EUR][1000 genomes]
rs2327462	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs23805	0.81[ASN][1000 genomes]
rs864244	0.81[EUR][1000 genomes]
rs876828	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349028	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380643	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
5	chr6:11921800-11930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:11923400-11929600	Weak transcription	Fetal Lung	lung
7	chr6:11924000-11929600	Weak transcription	K562	blood
8	chr6:11926000-11926600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:11926400-11926600	Weak transcription	Esophagus	oesophagus
10	chr6:11926400-11927400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:11926400-11927600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:11926400-11927800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:11926400-11927800	Weak transcription	Pancreas	Pancrea
14	chr6:11926400-11932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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