Variant report

Variant	rs9380643
Chromosome Location	chr6:11930487-11930488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11928332..11933261-chr6:12008543..12013027,5	K562	blood:
2	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
3	chr6:11930123..11933207-chr6:11933304..11936591,6	K562	blood:
4	chr6:11911731..11914610-chr6:11928299..11930986,2	K562	blood:
5	chr6:11929988..11932730-chr6:12024858..12026839,2	K562	blood:
6	chr6:11930485..11933038-chr6:11977448..11980283,2	K562	blood:
7	chr6:11929469..11931727-chr6:12007791..12010285,2	K562	blood:
8	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
9	chr6:11922871..11926216-chr6:11928261..11930855,3	K562	blood:
10	chr6:11921705..11923918-chr6:11929998..11931950,2	MCF-7	breast:
11	chr6:11930110..11931880-chr6:12011189..12013378,2	K562	blood:
12	chr6:11920219..11922474-chr6:11929481..11931505,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10947661	0.82[EUR][1000 genomes]
rs10947670	0.84[CHD][hapmap];0.91[GIH][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1205844	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1205845	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1210621	0.82[EUR][1000 genomes]
rs12196741	0.82[AMR][1000 genomes]
rs209777	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs209780	0.89[CHD][hapmap]
rs209783	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs209784	0.85[EUR][1000 genomes]
rs2327462	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs765392	0.80[ASW][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap]
rs848901	0.80[EUR][1000 genomes]
rs864244	0.82[EUR][1000 genomes]
rs876828	0.90[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9349028	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394412	0.81[EUR][1000 genomes]
rs9394416	0.81[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11926400-11932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:11928400-11932800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:11929400-11930600	Enhancers	NHEK	skin
5	chr6:11929600-11930800	Enhancers	Fetal Lung	lung
6	chr6:11929800-11930600	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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