Variant report

Variant	rs1205845
Chromosome Location	chr6:11929449-11929450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11928332..11933261-chr6:12008543..12013027,5	K562	blood:
2	chr6:11911731..11914610-chr6:11928299..11930986,2	K562	blood:
3	chr6:11909743..11911670-chr6:11928243..11930233,2	K562	blood:
4	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
5	chr6:11922871..11926216-chr6:11928261..11930855,3	K562	blood:
6	chr6:11928396..11930237-chr6:11946465..11949444,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10947661	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1205844	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1205849	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1205850	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1210621	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs169713	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs169714	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs209773	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209774	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs209776	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs209780	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209782	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209783	0.83[EUR][1000 genomes]
rs209784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs209786	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs23805	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6457983	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6905403	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs848901	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs85219	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs864244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9380643	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394412	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11921800-11930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11923400-11929600	Weak transcription	Fetal Lung	lung
4	chr6:11924000-11929600	Weak transcription	K562	blood
5	chr6:11926400-11932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:11928400-11932800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:11929400-11930000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:11929400-11930600	Enhancers	NHEK	skin

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