Variant report

Variant	rs1205850
Chromosome Location	chr6:11940593-11940594
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11937603..11940541-chr6:11940588..11943697,3	K562	blood:
2	chr6:11937603..11940636-chr6:11941347..11943697,3	K562	blood:
3	chr6:11934884..11941785-chr6:12006305..12013263,12	K562	blood:
4	chr6:11940312..11942234-chr6:11949542..11951160,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10947661	0.84[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205845	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1205849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205852	0.83[AMR][1000 genomes]
rs1205853	0.83[AMR][1000 genomes]
rs1205854	0.83[AMR][1000 genomes]
rs1205855	0.83[AMR][1000 genomes]
rs1205856	0.83[AMR][1000 genomes]
rs1205857	0.83[AMR][1000 genomes]
rs1205859	0.81[AMR][1000 genomes]
rs1205860	0.83[AMR][1000 genomes]
rs1205861	0.83[AMR][1000 genomes]
rs1205863	0.82[MKK][hapmap];0.83[AMR][1000 genomes]
rs1205864	0.83[AMR][1000 genomes]
rs1205865	0.83[AMR][1000 genomes]
rs1205866	0.83[AMR][1000 genomes]
rs1205867	0.83[AMR][1000 genomes]
rs1205871	0.83[AMR][1000 genomes]
rs1205872	0.83[AMR][1000 genomes]
rs1205873	0.83[AMR][1000 genomes]
rs1205874	0.83[AMR][1000 genomes]
rs1205875	0.83[AMR][1000 genomes]
rs1205876	0.83[AMR][1000 genomes]
rs1205877	0.83[AMR][1000 genomes]
rs1205879	0.83[AMR][1000 genomes]
rs1205880	0.83[AMR][1000 genomes]
rs1205881	0.83[AMR][1000 genomes]
rs1205882	0.82[MKK][hapmap];0.83[AMR][1000 genomes]
rs1205883	0.82[MKK][hapmap]
rs1205884	0.81[MKK][hapmap]
rs1205887	0.82[MKK][hapmap]
rs1210621	0.94[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs169713	0.88[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[ASN][1000 genomes]
rs169714	0.80[AMR][1000 genomes]
rs209773	0.82[AMR][1000 genomes]
rs209774	0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs209776	0.82[AMR][1000 genomes]
rs209780	0.84[GIH][hapmap];0.84[TSI][hapmap]
rs209782	0.80[AMR][1000 genomes]
rs209784	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs209786	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs209814	0.86[MKK][hapmap]
rs23805	0.80[AMR][1000 genomes]
rs2876246	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6457983	0.89[AMR][1000 genomes]
rs6905403	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs848901	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs85219	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs864244	0.94[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs864245	0.82[MKK][hapmap];0.83[AMR][1000 genomes]
rs9394412	0.94[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs960414	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519516	chr6:11938672-11942371	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11937800-11940600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:11939200-11940600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:11939200-11940800	Enhancers	K562	blood
4	chr6:11939200-11942800	Weak transcription	Liver	Liver
5	chr6:11939200-11943400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:11939200-11943400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:11939200-11943600	Weak transcription	Pancreas	Pancrea
8	chr6:11939600-11940600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:11939800-11942400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:11940200-11942400	Weak transcription	Fetal Intestine Small	intestine

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