Variant report

Variant	rs9394412
Chromosome Location	chr6:11931887-11931888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11822139..11824301-chr6:11930699..11933415,2	K562	blood:
2	chr6:11928332..11933261-chr6:12008543..12013027,5	K562	blood:
3	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
4	chr6:11930123..11933207-chr6:11933304..11936591,6	K562	blood:
5	chr6:11930827..11933254-chr6:12021729..12023432,3	K562	blood:
6	chr6:11930636..11932967-chr6:11944215..11946007,3	K562	blood:
7	chr6:11929988..11932730-chr6:12024858..12026839,2	K562	blood:
8	chr6:11930485..11933038-chr6:11977448..11980283,2	K562	blood:
9	chr6:11900471..11902675-chr6:11931742..11933826,2	K562	blood:
10	chr6:11921705..11923918-chr6:11929998..11931950,2	MCF-7	breast:
11	chr6:11930597..11932241-chr6:11988565..11991523,2	K562	blood:
12	chr6:11916810..11918568-chr6:11931723..11933958,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10947661	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1205844	0.81[EUR][1000 genomes]
rs1205845	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1205849	0.94[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1205850	0.94[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1205863	0.93[MEX][hapmap]
rs1205882	0.93[MEX][hapmap]
rs1205883	0.93[MEX][hapmap]
rs1205884	0.93[MEX][hapmap]
rs1205887	0.93[MEX][hapmap]
rs1210621	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs169713	0.94[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs169714	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs209773	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs209774	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209776	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs209780	0.84[CEU][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs209782	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs209784	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209786	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs209812	0.85[MEX][hapmap]
rs209814	0.93[MEX][hapmap]
rs23805	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6457983	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6905403	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs848901	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs85219	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs864244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs864245	0.93[MEX][hapmap]
rs9380643	0.81[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11926400-11932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:11928400-11932800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:11931200-11932400	Flanking Active TSS	K562	blood

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