Variant report

Variant	rs10947661
Chromosome Location	chr6:11934964-11934965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
2	chr6:11930123..11933207-chr6:11933304..11936591,6	K562	blood:
3	chr6:11922420..11924748-chr6:11934170..11937049,2	K562	blood:
4	chr6:11932429..11935750-chr6:12003143..12006010,3	K562	blood:
5	chr6:11934884..11941785-chr6:12006305..12013263,12	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1205844	0.81[EUR][1000 genomes]
rs1205845	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1205849	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205850	0.84[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205863	1.00[MEX][hapmap]
rs1205882	1.00[MEX][hapmap]
rs1205883	1.00[MEX][hapmap]
rs1205884	1.00[MEX][hapmap]
rs1205887	1.00[MEX][hapmap]
rs1210621	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs169713	0.94[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs169714	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs209773	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs209774	0.94[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs209776	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs209780	0.84[CEU][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs209782	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs209784	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209786	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs209812	0.92[MEX][hapmap]
rs209814	1.00[MEX][hapmap]
rs23805	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2876246	0.80[AMR][1000 genomes]
rs6457983	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6905403	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs848901	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs85219	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs864244	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs864245	1.00[MEX][hapmap]
rs9380643	0.82[EUR][1000 genomes]
rs9394412	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11933600-11938400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:11933800-11938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:11934200-11936800	ZNF genes & repeats	K562	blood
5	chr6:11934400-11935000	Flanking Active TSS	Liver	Liver

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