Variant report

Variant	rs209773
Chromosome Location	chr6:11913828-11913829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11908909..11912016-chr6:11912838..11916318,3	K562	blood:
2	chr6:11908584..11910107-chr6:11912503..11915052,2	MCF-7	breast:
3	chr6:11658704..11660656-chr6:11912465..11915132,2	K562	blood:
4	chr6:11913765..11915487-chr6:11938555..11940311,2	K562	blood:
5	chr6:11911981..11914460-chr6:11917367..11919083,2	K562	blood:
6	chr6:11909709..11911826-chr6:11913268..11914857,2	MCF-7	breast:
7	chr6:11911731..11914610-chr6:11928299..11930986,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10947661	0.84[CEU][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1205845	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1205849	0.82[AMR][1000 genomes]
rs1205850	0.82[GIH][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes]
rs1205863	0.86[MEX][hapmap]
rs1205882	0.86[MEX][hapmap]
rs1205883	0.86[MEX][hapmap]
rs1205884	0.86[MEX][hapmap]
rs1205887	0.86[MEX][hapmap]
rs1210621	0.83[CEU][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs169713	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs169714	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs209774	0.89[CEU][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs209776	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs209777	0.85[EUR][1000 genomes]
rs209780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209782	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209784	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs209786	0.82[AMR][1000 genomes]
rs209814	0.86[MEX][hapmap]
rs23805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457983	0.89[AMR][1000 genomes]
rs6905403	0.89[AMR][1000 genomes]
rs848901	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs85219	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs864244	0.84[CEU][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs864245	0.86[MEX][hapmap]
rs876828	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9380643	0.86[CHD][hapmap]
rs9394412	0.84[CEU][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11910600-11918000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:11913200-11915000	ZNF genes & repeats	K562	blood

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