Variant report

Variant	rs12196741
Chromosome Location	chr6:11934478-11934479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10947670	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2327462	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4714052	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4714067	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6457989	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6921943	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs765392	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349028	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369003	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380643	0.82[AMR][1000 genomes]
rs9394416	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11933600-11938400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:11933800-11938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:11934200-11936800	ZNF genes & repeats	K562	blood
5	chr6:11934400-11935000	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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