Variant report

Variant rs6458970
Chromosome Location chr6:53723814-53723815
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:53695000-53743200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr6:53703200-53726400 Weak transcription Fetal Stomach stomach
3 chr6:53703800-53727600 Weak transcription Stomach Smooth Muscle stomach
4 chr6:53709800-53762200 Weak transcription Primary B cells from cord blood blood
5 chr6:53717800-53731800 Weak transcription Primary hematopoietic stem cells blood
6 chr6:53719800-53727600 Enhancers Brain Substantia Nigra brain
7 chr6:53719800-53727800 Enhancers Brain Hippocampus Middle brain
8 chr6:53719800-53747800 Weak transcription Primary T cells from cord blood blood
9 chr6:53720000-53724000 Enhancers Brain Cingulate Gyrus brain
10 chr6:53720000-53724400 Enhancers Brain Anterior Caudate brain
11 chr6:53720000-53727600 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr6:53720600-53741400 Weak transcription Dnd41 blood
13 chr6:53720800-53736600 Weak transcription Fetal Thymus thymus
14 chr6:53721200-53726200 Weak transcription Fetal Intestine Small intestine
15 chr6:53721200-53726400 Weak transcription Fetal Intestine Large intestine
16 chr6:53721200-53726600 Weak transcription Rectal Smooth Muscle rectum
17 chr6:53721200-53726800 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr6:53721400-53724200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
19 chr6:53721600-53728000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr6:53721800-53725600 Weak transcription Aorta Aorta
21 chr6:53721800-53726800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr6:53722000-53725000 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr6:53722000-53748200 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr6:53722400-53724000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr6:53722400-53724400 Enhancers Brain Inferior Temporal Lobe brain
26 chr6:53722400-53725400 Weak transcription H1 Cell Line embryonic stem cell
27 chr6:53722600-53724000 Weak transcription Brain Germinal Matrix brain
28 chr6:53722600-53725000 Enhancers HUVEC blood vessel
29 chr6:53722600-53725400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr6:53722600-53725600 Weak transcription iPS-15b Cell Line embryonic stem cell
31 chr6:53722600-53725600 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr6:53722800-53724000 Enhancers Ovary ovary
33 chr6:53722800-53726200 Weak transcription HepG2 liver
34 chr6:53722800-53726400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr6:53723000-53725400 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr6:53723000-53725600 Weak transcription Lung lung
37 chr6:53723000-53726200 Weak transcription HSMMtube muscle
38 chr6:53723000-53727000 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr6:53723000-53727200 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr6:53723000-53727200 Enhancers Brain Angular Gyrus brain
41 chr6:53723000-53728000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr6:53723000-53728000 Weak transcription Pancreas Pancrea
43 chr6:53723000-53728000 Weak transcription Right Atrium heart
44 chr6:53723200-53725400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr6:53723200-53725600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr6:53723200-53725600 Weak transcription Colon Smooth Muscle Colon
47 chr6:53723200-53725800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr6:53723400-53724000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
49 chr6:53723400-53726000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr6:53723400-53726000 Weak transcription HMEC breast

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