Variant report

Variant	rs9357774
Chromosome Location	chr6:53758724-53758725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs13197492	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3000998	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3001002	0.83[ASN][1000 genomes]
rs3001003	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3003489	0.83[ASN][1000 genomes]
rs3003491	0.83[ASN][1000 genomes]
rs3003493	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs3003497	0.91[ASN][1000 genomes]
rs4236113	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4265033	0.83[ASN][1000 genomes]
rs4265034	0.82[AFR][1000 genomes]
rs4269375	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4276503	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4342426	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4351263	0.83[ASN][1000 genomes]
rs4382260	0.83[ASN][1000 genomes]
rs4398733	0.83[ASN][1000 genomes]
rs4475321	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4484515	0.83[ASN][1000 genomes]
rs4587161	0.84[EUR][1000 genomes]
rs4591854	0.83[ASN][1000 genomes]
rs4712048	0.83[ASN][1000 genomes]
rs4712049	0.83[ASN][1000 genomes]
rs4715425	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4715426	0.83[ASN][1000 genomes]
rs4715431	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5001609	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6458958	0.83[ASN][1000 genomes]
rs6458959	0.83[ASN][1000 genomes]
rs6458960	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6458961	0.83[ASN][1000 genomes]
rs6458962	0.83[ASN][1000 genomes]
rs6458966	0.83[ASN][1000 genomes]
rs6458970	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6650996	0.83[ASN][1000 genomes]
rs6900929	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6920743	0.83[ASN][1000 genomes]
rs7762883	0.83[ASN][1000 genomes]
rs7763147	0.83[ASN][1000 genomes]
rs7767443	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296722	0.82[AFR][1000 genomes]
rs9349686	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357775	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9367542	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9370236	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9382239	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9395887	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1021506	chr6:53600338-53770482	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830664	chr6:53698021-53825270	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53709800-53762200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:53730200-53758800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:53732000-53760400	Weak transcription	Aorta	Aorta
4	chr6:53737800-53768400	Weak transcription	Esophagus	oesophagus
5	chr6:53739000-53767800	Weak transcription	Ovary	ovary
6	chr6:53739000-53771800	Weak transcription	Pancreas	Pancrea
7	chr6:53740400-53761000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:53741800-53760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:53742200-53760800	Weak transcription	Fetal Intestine Large	intestine
10	chr6:53742200-53766200	Weak transcription	Fetal Stomach	stomach
11	chr6:53742400-53758800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:53743000-53761800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:53744000-53762400	Weak transcription	Placenta	Placenta
14	chr6:53744600-53764200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:53744800-53760400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:53745400-53760600	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:53745600-53762200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:53746400-53762000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:53746800-53762000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:53746800-53768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:53747600-53767800	Weak transcription	Small Intestine	intestine
22	chr6:53749000-53761800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:53749200-53763600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:53749200-53765800	Weak transcription	Primary T cells from cord blood	blood
25	chr6:53749400-53762600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:53750600-53760200	Weak transcription	HepG2	liver
27	chr6:53752400-53758800	Weak transcription	Brain Angular Gyrus	brain
28	chr6:53752400-53761200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:53752400-53771000	Weak transcription	Gastric	stomach
30	chr6:53752400-53771800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:53752600-53758800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:53752800-53782000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:53754200-53758800	Weak transcription	HMEC	breast
34	chr6:53754200-53758800	Weak transcription	NHEK	skin
35	chr6:53754400-53759000	Weak transcription	HSMM	muscle
36	chr6:53754400-53760800	Weak transcription	NH-A	brain
37	chr6:53754600-53759000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:53754800-53761000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:53754800-53775600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:53754800-53779800	Weak transcription	NHLF	lung
41	chr6:53755000-53779800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:53755400-53759000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:53756000-53758800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:53756000-53760800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:53756000-53761000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:53756000-53781800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:53756200-53758800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:53756200-53758800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:53756200-53759000	Weak transcription	HSMMtube	muscle
50	chr6:53756200-53761200	Weak transcription	HUVEC	blood vessel

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