Variant report

Variant rs4342426
Chromosome Location chr6:53664707-53664708
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:53661400-53666400 Weak transcription Primary B cells from cord blood blood
2 chr6:53661400-53666600 Weak transcription Aorta Aorta
3 chr6:53661400-53667200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr6:53661400-53668000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr6:53661400-53668000 Weak transcription Ovary ovary
6 chr6:53661400-53669800 Weak transcription Gastric stomach
7 chr6:53661400-53670400 Weak transcription Primary T cells from cord blood blood
8 chr6:53661400-53675600 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr6:53661400-53688200 Weak transcription Right Ventricle heart
10 chr6:53661600-53665000 Weak transcription Primary hematopoietic stem cells blood
11 chr6:53661600-53665800 Weak transcription NHLF lung
12 chr6:53662000-53670200 Weak transcription Placenta Amnion Placenta Amnion
13 chr6:53662200-53665800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr6:53662200-53667200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr6:53662400-53667400 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr6:53662400-53668000 Weak transcription NH-A brain
17 chr6:53662600-53664800 Enhancers HepG2 liver
18 chr6:53662600-53665800 Weak transcription Brain Anterior Caudate brain
19 chr6:53662600-53666800 Weak transcription H9 Cell Line embryonic stem cell
20 chr6:53662600-53666800 Weak transcription Stomach Smooth Muscle stomach
21 chr6:53662600-53668000 Weak transcription Pancreas Pancrea
22 chr6:53662600-53669600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr6:53662600-53670000 Weak transcription Esophagus oesophagus
24 chr6:53662600-53670400 Weak transcription Thymus Thymus
25 chr6:53662600-53677600 Weak transcription Small Intestine intestine
26 chr6:53662800-53667800 Weak transcription Rectal Smooth Muscle rectum
27 chr6:53662800-53668000 Weak transcription Brain Inferior Temporal Lobe brain
28 chr6:53662800-53668000 Weak transcription NHEK skin
29 chr6:53662800-53669800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr6:53662800-53669800 Weak transcription HMEC breast
31 chr6:53662800-53670200 Weak transcription Fetal Intestine Large intestine
32 chr6:53662800-53670200 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr6:53662800-53675400 Weak transcription Duodenum Mucosa Duodenum
34 chr6:53663000-53669800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr6:53663200-53670600 Weak transcription Fetal Intestine Small intestine
36 chr6:53663400-53664800 Enhancers Fetal Thymus thymus
37 chr6:53663600-53664800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr6:53663600-53664800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr6:53663600-53664800 Enhancers Sigmoid Colon Sigmoid Colon
40 chr6:53664000-53664800 Enhancers Brain Hippocampus Middle brain
41 chr6:53664000-53664800 Genic enhancers Dnd41 blood
42 chr6:53664000-53665000 Enhancers Brain Cingulate Gyrus brain
43 chr6:53664000-53668000 Weak transcription HUVEC blood vessel
44 chr6:53664000-53669000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
45 chr6:53664400-53664800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr6:53664400-53665000 Active TSS Rectal Mucosa Donor 29 rectum
47 chr6:53664600-53664800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
48 chr6:53664600-53665000 Enhancers Brain Substantia Nigra brain
49 chr6:53664600-53666000 Weak transcription Colon Smooth Muscle Colon

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