Variant report

Variant	rs6459379
Chromosome Location	chr6:14829331-14829332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14823252..14825585-chr6:14828791..14831420,2	K562	blood:
2	chr6:14828090..14830220-chr6:14891865..14894171,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs233495	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs233496	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs372827	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs404238	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs411347	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs452951	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4715927	0.82[ASN][1000 genomes]
rs6459378	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7755454	0.98[ASN][1000 genomes]
rs865082	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14825600-14830600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:14825800-14830600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:14826000-14829400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:14826200-14832000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:14826800-14830200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:14827400-14831800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:14827800-14829400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:14827800-14830600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:14828600-14830600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:14828600-14837600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:14829000-14829800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:14829000-14831000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:14829000-14831600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:14829200-14829400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:14829200-14830400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:14829200-14830600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:14829200-14830600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:14829200-14831000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:14829200-14831000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:14829200-14831600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:14829200-14831800	Weak transcription	Fetal Kidney	kidney

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