Variant report

Variant	rs865082
Chromosome Location	chr6:14838734-14838735
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs233495	0.87[EUR][1000 genomes]
rs233496	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs372827	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs404238	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs411347	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs452951	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6459378	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6459379	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755454	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14832200-14855400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14832800-14839000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:14833000-14838800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:14836600-14840200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:14837000-14839800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:14837200-14839600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:14837800-14839000	Enhancers	Stomach Smooth Muscle	stomach
8	chr6:14837800-14839600	Enhancers	Fetal Lung	lung
9	chr6:14837800-14839600	Enhancers	Ovary	ovary
10	chr6:14837800-14839800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:14838000-14839400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:14838000-14839600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:14838000-14839600	Enhancers	Colon Smooth Muscle	Colon
14	chr6:14838200-14838800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:14838200-14839000	Enhancers	NHDF-Ad	bronchial
16	chr6:14838200-14839200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:14838200-14841800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:14838400-14839800	Enhancers	Fetal Muscle Leg	muscle
19	chr6:14838400-14841800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:14838600-14839400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:14838600-14839800	Weak transcription	Fetal Kidney	kidney
22	chr6:14838600-14842200	Weak transcription	Fetal Stomach	stomach
23	chr6:14838600-14842400	Weak transcription	Rectal Smooth Muscle	rectum

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