The 2.0 version of rSNPBase

Variant report

Variant rs6460897
Chromosome Location chr7:12252741-12252742
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:12249800-12253000 Active TSS Pancreatic Islets Pancreatic Islet
2 chr7:12250600-12252800 Active TSS iPS-20b Cell Line embryonic stem cell
3 chr7:12252000-12252800 Active TSS iPS-18 Cell Line embryonic stem cell
4 chr7:12252000-12252800 Enhancers Primary B cells from cord blood blood
5 chr7:12252000-12252800 Enhancers Muscle Satellite Cultured Cells --
6 chr7:12252000-12252800 Enhancers Brain Substantia Nigra brain
7 chr7:12252000-12253400 Weak transcription Brain Hippocampus Middle brain
8 chr7:12252000-12254200 Enhancers Primary T regulatory cells fromperipheralblood blood
9 chr7:12252000-12254400 Enhancers Breast Myoepithelial Primary Cells Breast
10 chr7:12252000-12254400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr7:12252000-12254400 Enhancers Primary T helper naive cells fromperipheralblood blood
12 chr7:12252000-12254400 Enhancers Primary T killer memory cells from peripheral blood blood
13 chr7:12252000-12254400 Weak transcription Fetal Muscle Trunk muscle
14 chr7:12252000-12254800 Enhancers Primary T helper naive cells from peripheral blood blood
15 chr7:12252000-12255400 Weak transcription Primary monocytes fromperipheralblood blood
16 chr7:12252000-12255400 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr7:12252000-12256000 Weak transcription Lung lung
18 chr7:12252000-12256200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr7:12252000-12256200 Weak transcription Ovary ovary
20 chr7:12252000-12256200 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr7:12252000-12256400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr7:12252000-12261200 Weak transcription Aorta Aorta
23 chr7:12252000-12261200 Weak transcription Esophagus oesophagus
24 chr7:12252000-12261200 Weak transcription Stomach Mucosa stomach
25 chr7:12252000-12263600 Weak transcription Thymus Thymus
26 chr7:12252000-12266200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr7:12252000-12271000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr7:12252000-12271600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr7:12252000-12277600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr7:12252000-12278200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr7:12252000-12280000 Weak transcription Colonic Mucosa Colon
32 chr7:12252000-12280000 Weak transcription Right Ventricle heart
33 chr7:12252000-12285400 Weak transcription Spleen Spleen
34 chr7:12252200-12252800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr7:12252200-12253000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr7:12252200-12253000 Enhancers Duodenum Smooth Muscle Duodenum
37 chr7:12252200-12253200 Enhancers HepG2 liver
38 chr7:12252200-12253400 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr7:12252200-12253600 Enhancers Fetal Lung lung
40 chr7:12252200-12254000 Enhancers Primary T helper cells fromperipheralblood blood
41 chr7:12252200-12254000 Weak transcription Colon Smooth Muscle Colon
42 chr7:12252200-12254400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr7:12252200-12254400 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr7:12252200-12254600 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr7:12252200-12258400 Weak transcription HSMM muscle
46 chr7:12252200-12259600 Weak transcription HMEC breast
47 chr7:12252200-12262200 Weak transcription GM12878-XiMat blood
48 chr7:12252200-12263600 Weak transcription NH-A brain
49 chr7:12252200-12263800 Weak transcription Osteobl bone
50 chr7:12252200-12279200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015