Variant report

Variant	rs6465984
Chromosome Location	chr7:104010267-104010268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10280803	0.82[AFR][1000 genomes]
rs1124994	0.88[CEU][hapmap]
rs12673807	0.88[CEU][hapmap]
rs13244850	0.82[JPT][hapmap]
rs1468142	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1557689	0.80[CHD][hapmap];0.82[JPT][hapmap]
rs2106504	0.88[CEU][hapmap]
rs2157914	0.86[CEU][hapmap]
rs4593449	0.88[CEU][hapmap];0.88[YRI][hapmap]
rs6958831	0.88[CEU][hapmap];0.88[LWK][hapmap];0.90[MKK][hapmap];0.82[AFR][1000 genomes]
rs7779270	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6465984	UFSP1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104004200-104010600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:104004800-104016600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:104008600-104012200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:104009200-104010600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:104009800-104011400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:104010200-104010400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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