Variant report

Variant	rs7779270
Chromosome Location	chr7:104016553-104016554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10233854	0.91[CEU][hapmap]
rs13244850	0.82[JPT][hapmap]
rs1468142	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs1557689	0.82[JPT][hapmap]
rs1557693	0.91[CEU][hapmap]
rs17137518	0.90[CEU][hapmap]
rs2106501	0.91[CEU][hapmap]
rs41389845	0.90[CEU][hapmap]
rs6465984	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6976167	0.90[CEU][hapmap]
rs6980365	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104004800-104016600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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