Variant report
| Variant | rs10233854 |
|---|---|
| Chromosome Location | chr7:104056057-104056058 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103913016..103913860-chr7:104055484..104056822,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10243493 | 0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1557693 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17137518 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17137665 | 0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs2106501 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs36109662 | 0.82[ASN][1000 genomes] |
| rs41389845 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs42181 | 0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs6976167 | 1.00[CEU][hapmap] |
| rs6980365 | 1.00[CEU][hapmap] |
| rs727927 | 0.81[CEU][hapmap] |
| rs739506 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs739507 | 1.00[EUR][1000 genomes] |
| rs7779270 | 0.91[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888925 | chr7:104047599-104170560 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
