Variant report

Variant	rs42181
Chromosome Location	chr7:104073443-104073444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10233854	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10239251	0.81[CHD][hapmap];0.81[YRI][hapmap]
rs10243493	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11763095	0.81[CHD][hapmap]
rs1557693	0.81[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[ASN][1000 genomes]
rs17137518	0.81[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs17137665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2106501	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs36109662	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41389845	0.81[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[YRI][hapmap]
rs6976167	0.81[CEU][hapmap];0.86[TSI][hapmap];0.81[YRI][hapmap]
rs6980365	0.89[CEU][hapmap];0.81[YRI][hapmap]
rs727927	1.00[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs739506	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs42181	POP7	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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