Variant report

Variant	rs11763095
Chromosome Location	chr7:104091769-104091770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104090683..104093466-chr7:104097985..104100510,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10232719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10248554	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10248577	0.92[EUR][1000 genomes]
rs10248586	1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10248725	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10248853	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10252016	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10253179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10258646	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10263143	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10267229	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10267467	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10268222	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs10278196	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10279103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11768543	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11768629	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12112342	1.00[CEU][hapmap]
rs12705211	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12705212	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12705213	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12705217	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13223335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224554	1.00[CEU][hapmap]
rs17137665	0.81[CHD][hapmap]
rs1858780	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs28504445	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590508	0.82[ASN][1000 genomes]
rs36109662	0.85[AFR][1000 genomes]
rs42181	0.81[CHD][hapmap]
rs6977154	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7796342	1.00[CEU][hapmap]
rs7806966	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7807089	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811730	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11763095	LRCH4	cis	parietal	SCAN
rs11763095	KCNJ3	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104084600-104092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:104091400-104092000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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