Variant report

Variant	rs7807089
Chromosome Location	chr7:104090420-104090421
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10232719	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239251	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10248554	0.96[EUR][1000 genomes]
rs10248577	0.94[EUR][1000 genomes]
rs10248586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10248725	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10248853	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10253179	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10258646	0.96[EUR][1000 genomes]
rs10267229	1.00[EUR][1000 genomes]
rs10267467	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278196	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279103	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11763095	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705211	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12705212	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12705213	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12705217	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13223335	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28504445	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590508	0.82[ASN][1000 genomes]
rs6977154	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7806966	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104084600-104092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links