Variant report

Variant	rs10248586
Chromosome Location	chr7:104085379-104085380
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10232719	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10239251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248554	0.97[EUR][1000 genomes]
rs10248577	0.95[EUR][1000 genomes]
rs10248725	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10248853	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10252016	0.86[YRI][hapmap]
rs10253179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10258646	0.97[EUR][1000 genomes]
rs10267229	0.93[EUR][1000 genomes]
rs10267467	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10278196	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10279103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763095	1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12705211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705212	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12705213	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12705217	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13223335	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28504445	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28590508	0.81[ASN][1000 genomes]
rs6977154	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7806966	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7807089	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104084600-104092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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