Variant report

Variant	rs12705217
Chromosome Location	chr7:104108934-104108935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10232719	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10239251	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10248554	0.84[EUR][1000 genomes]
rs10248577	0.83[EUR][1000 genomes]
rs10248586	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10248725	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10248853	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10252016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10253179	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10258646	0.84[EUR][1000 genomes]
rs10263143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10267229	0.88[EUR][1000 genomes]
rs10267467	0.88[EUR][1000 genomes]
rs10268222	1.00[CEU][hapmap]
rs10278196	0.88[EUR][1000 genomes]
rs10279103	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11763095	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11768543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11768629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12112342	1.00[CEU][hapmap]
rs12705211	0.94[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12705212	0.88[EUR][1000 genomes]
rs12705213	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13223335	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13224554	1.00[CEU][hapmap]
rs1858780	1.00[CEU][hapmap]
rs28504445	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28590508	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6977154	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7796342	1.00[CEU][hapmap]
rs7806966	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7807089	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7811730	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104108800-104109000	Enhancers	Rectal Mucosa Donor 31	rectum

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