Variant report

Variant	rs12705211
Chromosome Location	chr7:104083972-104083973
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10232719	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10239251	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248554	0.89[EUR][1000 genomes]
rs10248577	0.87[EUR][1000 genomes]
rs10248586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248725	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs10248853	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs10252016	0.94[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10253179	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10258646	0.89[EUR][1000 genomes]
rs10263143	0.94[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10267229	0.85[EUR][1000 genomes]
rs10267467	0.85[EUR][1000 genomes]
rs10268222	0.94[CEU][hapmap]
rs10278196	0.85[EUR][1000 genomes]
rs10279103	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763095	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11768543	0.94[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs11768629	0.93[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap]
rs12112342	0.94[CEU][hapmap]
rs12705212	0.85[EUR][1000 genomes]
rs12705213	0.83[EUR][1000 genomes]
rs12705217	0.94[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13223335	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13224554	0.94[CEU][hapmap]
rs13244850	0.82[JPT][hapmap]
rs1557689	0.82[JPT][hapmap]
rs1858780	0.94[CEU][hapmap]
rs28504445	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28590508	0.81[ASN][1000 genomes]
rs36109662	0.93[AFR][1000 genomes]
rs6977154	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs7796342	0.94[CEU][hapmap]
rs7806966	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs7807089	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7811730	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104082800-104084000	Enhancers	Fetal Brain Female	brain
2	chr7:104083200-104084800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:104083600-104084400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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