Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10233854	0.81[CEU][hapmap]
rs10248554	0.92[AFR][1000 genomes]
rs10248577	0.88[AFR][1000 genomes]
rs10248725	0.89[ASW][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs10248853	0.89[ASW][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs10258646	0.91[AFR][1000 genomes]
rs10267229	0.87[AFR][1000 genomes]
rs10267467	0.85[AFR][1000 genomes]
rs10268222	0.81[CHD][hapmap]
rs10278196	0.88[AFR][1000 genomes]
rs12112342	0.81[CHB][hapmap]
rs12705212	0.88[AFR][1000 genomes]
rs13238946	0.85[CHB][hapmap]
rs1557693	0.81[CEU][hapmap]
rs17137518	0.81[CEU][hapmap]
rs17137665	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs1858780	0.81[CHD][hapmap]
rs2106501	0.81[CEU][hapmap]
rs36109662	0.98[EUR][1000 genomes]
rs41389845	0.81[CEU][hapmap]
rs42181	1.00[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap]
rs6976167	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs6977154	0.81[CHB][hapmap];0.83[JPT][hapmap];0.88[AFR][1000 genomes]
rs6980365	0.89[CEU][hapmap];0.88[JPT][hapmap]
rs7796342	0.80[CHB][hapmap]
rs7806966	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs7811730	0.81[CHB][hapmap];0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs727927	POP7	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104082800-104084000	Enhancers	Fetal Brain Female	brain
2	chr7:104083200-104084800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:104083600-104084400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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