Variant report
| Variant | rs6958831 |
|---|---|
| Chromosome Location | chr7:103990382-103990383 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103847182..103849420-chr7:103988053..103990477,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164815 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10240925 | 0.90[CHB][hapmap];0.88[MEX][hapmap] |
| rs10280803 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1124994 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12673807 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs1468142 | 0.88[CEU][hapmap];0.82[AFR][1000 genomes] |
| rs2106504 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap] |
| rs2157914 | 1.00[CEU][hapmap] |
| rs2188490 | 0.88[EUR][1000 genomes] |
| rs4593449 | 1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap] |
| rs6465984 | 0.88[CEU][hapmap];0.88[LWK][hapmap];0.90[MKK][hapmap];0.82[AFR][1000 genomes] |
| rs6970753 | 0.90[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv608065 | chr7:103817597-103990755 | Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv608067 | chr7:103944237-104029408 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
