Variant report

Variant	rs10240925
Chromosome Location	chr7:103997924-103997925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10280803	0.83[AMR][1000 genomes]
rs12534139	0.94[ASN][1000 genomes]
rs12539370	0.92[ASN][1000 genomes]
rs12673807	0.88[MEX][hapmap]
rs13244850	0.84[YRI][hapmap]
rs2106504	0.83[MEX][hapmap]
rs2188492	0.97[ASN][1000 genomes]
rs60623501	0.96[ASN][1000 genomes]
rs6958831	0.90[CHB][hapmap];0.88[MEX][hapmap];0.85[AMR][1000 genomes]
rs6970753	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10240925	ATXN7L1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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