Variant report

Variant	rs646613
Chromosome Location	chr10:6487284-6487285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6487256..6488315-chr10:6709317..6710337,7	MCF-7	breast:
2	chr10:6487231..6487858-chr10:6709417..6710239,2	MCF-7	breast:
3	chr10:6486742..6489552-chr10:6709675..6712349,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10508308	0.83[EUR][1000 genomes]
rs10752329	0.81[EUR][1000 genomes]
rs10752330	0.87[EUR][1000 genomes]
rs10906504	0.87[EUR][1000 genomes]
rs11258967	0.83[EUR][1000 genomes]
rs12775595	0.83[EUR][1000 genomes]
rs12780187	0.83[EUR][1000 genomes]
rs3793724	0.83[EUR][1000 genomes]
rs4237436	0.87[EUR][1000 genomes]
rs4750422	0.87[EUR][1000 genomes]
rs590467	0.92[EUR][1000 genomes]
rs681071	0.86[EUR][1000 genomes]
rs688853	0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs7893745	0.83[EUR][1000 genomes]
rs7910745	0.81[EUR][1000 genomes]
rs7911478	0.83[EUR][1000 genomes]
rs7918923	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6456200-6496600	Weak transcription	Pancreas	Pancrea
2	chr10:6464600-6490600	Strong transcription	Primary T cells from cord blood	blood
3	chr10:6464800-6487400	Strong transcription	Thymus	Thymus
4	chr10:6465800-6496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:6465800-6496600	Weak transcription	Psoas Muscle	Psoas
6	chr10:6465800-6501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:6466400-6487800	Weak transcription	Fetal Stomach	stomach
8	chr10:6467400-6496200	Weak transcription	Lung	lung
9	chr10:6467600-6487600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:6467800-6487400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:6467800-6487600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:6468000-6487600	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:6468000-6487800	Weak transcription	Brain Angular Gyrus	brain
14	chr10:6468200-6496800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:6471200-6490200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:6473600-6487800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:6474200-6490400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:6474400-6487400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:6477400-6487800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:6477400-6503600	Weak transcription	Gastric	stomach
21	chr10:6478800-6491000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:6479200-6487400	Weak transcription	Brain Anterior Caudate	brain
23	chr10:6479800-6487800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:6480200-6501000	Weak transcription	Ovary	ovary
25	chr10:6480800-6497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:6481200-6500200	Weak transcription	Fetal Intestine Small	intestine
27	chr10:6481400-6497800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:6483200-6487600	Weak transcription	Brain Substantia Nigra	brain
29	chr10:6484000-6489400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:6484000-6489400	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:6484000-6496200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:6484200-6487800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:6484200-6487800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:6484200-6496200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:6484200-6496400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:6484400-6487800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:6484600-6487800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:6484600-6489400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:6484600-6496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:6484800-6487400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr10:6485400-6487800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:6485400-6487800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr10:6485400-6487800	Weak transcription	K562	blood
44	chr10:6485600-6487800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:6485600-6487800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:6485800-6487400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:6485800-6487800	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:6485800-6488600	Weak transcription	Aorta	Aorta
49	chr10:6486000-6487600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:6486600-6487800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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