Variant report

Variant	rs7910745
Chromosome Location	chr10:6493308-6493309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10508307	0.87[ASN][1000 genomes]
rs10508308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11258612	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11258967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12770464	0.86[EUR][1000 genomes]
rs12775595	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12780187	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17155850	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17155855	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34316142	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3793724	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3793725	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3793726	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs646613	0.81[EUR][1000 genomes]
rs686333	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs688853	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7893745	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7898408	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7911478	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918923	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs961203	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6456200-6496600	Weak transcription	Pancreas	Pancrea
2	chr10:6465800-6496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:6465800-6496600	Weak transcription	Psoas Muscle	Psoas
4	chr10:6465800-6501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:6467400-6496200	Weak transcription	Lung	lung
6	chr10:6468200-6496800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:6477400-6503600	Weak transcription	Gastric	stomach
8	chr10:6480200-6501000	Weak transcription	Ovary	ovary
9	chr10:6480800-6497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:6481200-6500200	Weak transcription	Fetal Intestine Small	intestine
11	chr10:6481400-6497800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:6484000-6496200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:6484200-6496200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:6484200-6496400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:6484600-6496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:6488200-6496200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:6488200-6496200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:6488200-6496200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:6488200-6496200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:6488200-6496200	Weak transcription	Brain Substantia Nigra	brain
21	chr10:6488200-6496400	Weak transcription	Adipose Nuclei	Adipose
22	chr10:6488200-6496400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:6488200-6497600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:6488200-6499600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:6488200-6500200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:6488200-6502000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:6488400-6496600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:6488400-6496600	Weak transcription	Brain Anterior Caudate	brain
29	chr10:6488400-6500200	Weak transcription	Esophagus	oesophagus
30	chr10:6488400-6506800	Weak transcription	K562	blood
31	chr10:6490000-6497800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:6490200-6496000	Weak transcription	Dnd41	blood
33	chr10:6490200-6496200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:6490200-6496200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:6490400-6496000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:6490400-6496200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:6490400-6496200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr10:6490400-6496200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:6490400-6496200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:6490400-6496200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:6490400-6496200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:6490400-6496200	Weak transcription	Aorta	Aorta
43	chr10:6490400-6496200	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:6490400-6496200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:6490400-6496200	Weak transcription	Thymus	Thymus
46	chr10:6490400-6496400	Weak transcription	Brain Angular Gyrus	brain
47	chr10:6490400-6496400	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:6490400-6497600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:6490600-6496000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:6490600-6496000	Weak transcription	Fetal Thymus	thymus

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