Variant report

Variant	rs7898408
Chromosome Location	chr10:6463209-6463210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6461189..6464390-chr10:6464587..6469079,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508308	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10752329	1.00[ASN][1000 genomes]
rs10752330	1.00[ASN][1000 genomes]
rs10906504	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11258515	0.90[ASN][1000 genomes]
rs11258589	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11258612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11258967	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12572911	0.90[ASN][1000 genomes]
rs12770464	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12775595	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12780187	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17155850	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17155855	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34316142	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35935618	0.90[ASN][1000 genomes]
rs3793724	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3793725	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3793726	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4237436	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4750422	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs590467	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs681071	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs686333	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688853	0.84[AMR][1000 genomes]
rs71479777	0.90[ASN][1000 genomes]
rs7893745	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7910745	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7911478	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7918923	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs961203	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9633784	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1053177	chr10:6453307-6473114	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6452200-6468200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:6452600-6478600	Weak transcription	Brain Anterior Caudate	brain
3	chr10:6452600-6481400	Weak transcription	Brain Substantia Nigra	brain
4	chr10:6452800-6464400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:6452800-6464600	Weak transcription	Primary T cells from cord blood	blood
6	chr10:6453000-6465600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:6453200-6465000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:6453200-6469200	Weak transcription	Dnd41	blood
9	chr10:6453200-6470800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:6453400-6464200	Weak transcription	Fetal Thymus	thymus
11	chr10:6453400-6467800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:6453400-6469000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:6453600-6467600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:6454000-6472800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:6454200-6464800	Weak transcription	Thymus	Thymus
16	chr10:6456200-6496600	Weak transcription	Pancreas	Pancrea
17	chr10:6459800-6464600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:6459800-6469200	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:6459800-6472600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:6460600-6465000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:6460600-6481200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:6460800-6472600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:6461000-6469200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:6461200-6468000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:6462400-6467000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr10:6462400-6467800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:6462400-6469200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:6463200-6463400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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