Variant report

Variant	rs11258589
Chromosome Location	chr10:6454687-6454688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10752329	0.92[ASN][1000 genomes]
rs10752330	0.92[ASN][1000 genomes]
rs10906504	0.92[ASN][1000 genomes]
rs11258500	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11258501	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11258515	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11258612	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572911	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12770464	0.82[EUR][1000 genomes]
rs17155850	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17155855	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2296125	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34316142	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35935618	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4237436	0.92[ASN][1000 genomes]
rs4750422	0.92[ASN][1000 genomes]
rs590467	0.90[ASN][1000 genomes]
rs681071	0.92[ASN][1000 genomes]
rs686333	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71479777	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7898408	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs961203	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9633784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1053177	chr10:6453307-6473114	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6452200-6468200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:6452600-6454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:6452600-6478600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:6452600-6481400	Weak transcription	Brain Substantia Nigra	brain
5	chr10:6452800-6457200	Weak transcription	Right Ventricle	heart
6	chr10:6452800-6464400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:6452800-6464600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:6453000-6465600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:6453200-6465000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:6453200-6469200	Weak transcription	Dnd41	blood
11	chr10:6453200-6470800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:6453400-6464200	Weak transcription	Fetal Thymus	thymus
13	chr10:6453400-6467800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:6453400-6469000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:6453600-6467600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:6453800-6455400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:6454000-6472800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:6454200-6464800	Weak transcription	Thymus	Thymus

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