Variant report

Variant	rs35935618
Chromosome Location	chr10:6451504-6451505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6243567..6245351-chr10:6449520..6452478,2	K562	blood:
2	chr10:6447268..6450081-chr10:6450323..6453408,3	K562	blood:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10752329	0.90[ASN][1000 genomes]
rs10752330	0.90[ASN][1000 genomes]
rs10906504	0.90[ASN][1000 genomes]
rs11258500	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11258501	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11258515	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11258589	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11258612	0.92[ASN][1000 genomes]
rs12572911	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155850	0.88[ASN][1000 genomes]
rs17155855	0.88[ASN][1000 genomes]
rs2296125	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34316142	0.90[ASN][1000 genomes]
rs4237436	0.90[ASN][1000 genomes]
rs4750422	0.90[ASN][1000 genomes]
rs590467	0.88[ASN][1000 genomes]
rs681071	0.90[ASN][1000 genomes]
rs686333	0.90[ASN][1000 genomes]
rs71479777	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898408	0.90[ASN][1000 genomes]
rs961203	0.86[ASN][1000 genomes]
rs9633784	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3357360	chr10:6447346-6451644	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6443400-6452000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:6443800-6451800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:6444000-6451600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:6444000-6452000	Weak transcription	Brain Anterior Caudate	brain
5	chr10:6444000-6452000	Weak transcription	Right Ventricle	heart
6	chr10:6444000-6452400	Weak transcription	Right Atrium	heart
7	chr10:6444200-6452000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:6445600-6452000	Weak transcription	Psoas Muscle	Psoas
9	chr10:6446000-6452000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:6449000-6451600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:6449200-6451600	Weak transcription	Primary T cells from cord blood	blood
12	chr10:6449200-6451800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:6449200-6451800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:6449200-6451800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:6449400-6451600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:6449600-6452000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:6449600-6452600	Weak transcription	Pancreas	Pancrea
18	chr10:6449800-6451800	Weak transcription	Fetal Kidney	kidney
19	chr10:6450600-6454000	Enhancers	Fetal Lung	lung
20	chr10:6450800-6452000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:6450800-6452000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:6451000-6451600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:6451000-6452000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:6451000-6452000	Enhancers	Dnd41	blood
25	chr10:6451000-6452800	Enhancers	Fetal Stomach	stomach
26	chr10:6451200-6451800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr10:6451400-6451800	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr10:6451400-6452000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr10:6451400-6452000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:6451400-6452000	Enhancers	Rectal Smooth Muscle	rectum
31	chr10:6451400-6452400	Flanking Active TSS	Fetal Thymus	thymus
32	chr10:6451400-6452400	Active TSS	Thymus	Thymus
33	chr10:6451400-6452800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:6451400-6452800	Enhancers	Fetal Muscle Leg	muscle
35	chr10:6451400-6453600	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links